CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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XM_002888165.1
(
Arabidopsis lyrata
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
scaffold_200722.1
T46106_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
scaffold_200722.1
RRM
8
76
LFVGGIGKETSEEDLKQYFSRYGLVLGAVVAKDKVTGISRGFGFVRFANDYDVVKALSGTHFILGKPVD
scaffold_200722.1
RRM
122
191
IFVGGLSSNTTQEEFKSYFERFGRTIDVVVMHDGVTNKPRGFGFVTYDSEDSVEFVMQSNFHELSDKRVE
Links
Other
RRM
family RBPs
Other
Arabidopsis lyrata
RBPs
1 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
ATRBP1
Arabidopsis thaliana
AT1G58470-TAIR-G
N
0.899