CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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SGN1
(
Saccharomyces cerevisiae
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
YIR001C
T46350_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
YIR001C
RRM
66
135
IFVGNITPDVTPEQIEDHFKDCGQIKRITLLYDRNTGTPKGYGYIEFESPAYREKALQLNGGELKGKKIA
Links
Other
RRM
family RBPs
Other
Saccharomyces cerevisiae
RBPs
4 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
11266_YIR001C
Saccharomyces paradoxus
11266_YIR001C
N
0.971
11153_YIR001C
Saccharomyces mikatae
11153_YIR001C
N
0.900
11293_YIR001C
Saccharomyces bayanus
11293_YIR001C
N
0.886
Skud_Contig1595.2
Saccharomyces kudriavzevii
Skud_Contig1595.2
N
0.886