CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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LinJ30_V3.1170
(
Leishmania infantum
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
LinJ30_V3.1170
T46949_0.6
EuPathDB (2010-Sep-21)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
LinJ30_V3.1170
RRM
15
71
PAFHSRSMLCRAFWPFGRVMEISIHDGKSYAFVHLRRTEEAKAAVDALIESRELGAA
LinJ30_V3.1170
RRM
159
222
LWVGNLVPYITNEKLTEVFEVFGPISSVSRLGRSNMAFLHYETVEQCTMAIETMKGRPIEGVML
LinJ30_V3.1170
RRM
275
339
IYLGHLPADADAKDVEDLFAPYDGFIFSKFVASNGIGFGHFDTIESSRVARAGLSNAMIKGTPIR
Links
Other
RRM
family RBPs
Other
Leishmania infantum
RBPs
3 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
LmjF30.1110
Leishmania major
LmjF30.1110
N
0.995
LmxM29.1110
Leishmania mexicana
LmxM29.1110
N
0.973
LbrM30_V2.1230
Leishmania braziliensis
LbrM30_V2.1230
N
0.957