CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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PBANKA_010520
(
Plasmodium berghei
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
PBANKA_010520
T47219_0.6
EuPathDB (2010-Sep-21)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
PBANKA_010520
RRM
165
190
LILKNIPSDIDEEDIKSLIKPFVNNK
PBANKA_010520
RRM
311
377
VSVVNMQYPVDMELIYYLFSKCGIVEKIITISKKTSIFQALVQLESIQVAKEAIKTLHNRNIYDGCN
PBANKA_010520
RRM
458
524
LICYNIPKDYSDVNKLFNLFSVYGYVSRIKILREKPDSALIQYSNYLFSSLAQECLQHAKICQNILE
PBANKA_010520
RRM
576
645
LFISNVSEEVTEECIIALFNKYDEINKFKSQPIKEGKKNFTATIEMNSEDTATKALMDLHNFQLKDRCMK
Links
Other
RRM
family RBPs
Other
Plasmodium berghei
RBPs
2 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
PCHAS_010580
Plasmodium chabaudi
PCHAS_010580
I
0.921
PVX_113495
Plasmodium vivax
PVX_113495
I
0.721