PFF0320c (Plasmodium falciparum)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 PFF0320c T47397_0.6 EuPathDB (2010-Sep-21)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
PFF0320c
M203_0.6		 Plasmodium falciparum ACUAAWC RNAcompete
Ray et al.(2013)
RNCMPT00235 		(Direct)

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

Experimental Constructs

Motif ID Domain From To Sequence
M203_0.6 RRM 51 86
M203_0.6 RRM 191 257
M203_0.6 RRM 338 404
M203_0.6 RRM 456 525

RNA Binding Domains

Protein ID Domain From To Sequence
PFF0320c RRM 180 215
PFF0320c RRM 320 386
PFF0320c RRM 467 533
PFF0320c RRM 585 654

Links

Other RRM family RBPs
Other Plasmodium falciparum RBPs

3 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
PVX_113495 Plasmodium vivax PVX_113495 I 0.750
PKH_114270 Plasmodium knowlesi PKH_114270 I 0.721
PCHAS_010580 Plasmodium chabaudi PCHAS_010580 I 0.704