CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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TGGT1_079300
(
Toxoplasma gondii
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
TGGT1_079300
T47884_0.6
EuPathDB (2010-Sep-21)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
TGGT1_079300
RRM
31
101
LYIGNLDSQVDDDLLWELFVQCGPVRTVSVPRDKLTGNHQGYGFVEFRNEVDADYALKLMNMVKLYGKALR
TGGT1_079300
RRM
118
188
VFLGNLDPDVDEKTIYDTFSAFGNIISAKIMRDPETGLSRGFGFVSFDTFEASDAALAAMNGQFICNRPIH
Links
Other
RRM
family RBPs
Other
Toxoplasma gondii
RBPs
4 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
TGME49_024580
Toxoplasma gondii
TGME49_024580
N
1.000
TGVEG_065460
Toxoplasma gondii
TGVEG_065460
N
1.000
NCLIV_048140
Neospora caninum
NCLIV_048140
N
0.951
GSVIVG00018991001
Vitis vinifera
GSVIVG00018991001
I
0.706