CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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SNAPOd2T00012880001
(
Oikopleura dioica
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
SNAPOd2T00012880001
T48398_0.6
Genoscope (2013-Jan-11)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
SNAPOd2T00012880001
RRM
13
83
LYVGDLHPEATEAMLYDKFSQAGPVLSIRVCRDMITRRSLGYAYVNFQRPEDAERAIDTMNFDELKGKAIR
SNAPOd2T00012880001
RRM
101
121
IFIKNLDKTIDNKMLYDTFFR
Links
Other
RRM
family RBPs
Other
Oikopleura dioica
RBPs
1 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
PABPC4
Homo sapiens
ENSG00000090621
D
0.760