Aqu1.225091 (Amphimedon queenslandica)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRM_1) IPR000504 Aqu1.225091 T49022_0.6 JGI (2010-Jan-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
No direct experiments

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
SRSF2
M352_0.6 		Homo sapiens AGSAGAGUA SELEX
Cook et al.(2011)
953_7543047 		0.718
SRSF2
M332_0.6 		Homo sapiens UGUUCSAGWU SELEX
Cook et al.(2011)
791_10094314 		0.718
SRSF2
M274_0.6 		Homo sapiens GUUCGAGUA SELEX
Cook et al.(2011)
244_7543047 		0.718
SRSF2
M070_0.6 		Homo sapiens GGAGWD RNAcompete
Ray et al.(2013)
RNCMPT00072 		0.718
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

RNA Binding Domains

Protein ID Domain From To Sequence
Aqu1.225091 RRM 4 74

Links

Other RRM family RBPs
Other Amphimedon queenslandica RBPs

37 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
Aqu1.225090 Amphimedon queenslandica Aqu1.225090 I 1.000
SRSF2 Ornithorhynchus anatinus ENSOANG00000002695 I 0.718
Srsf2 Mus musculus ENSMUSG00000034120 I 0.718
LOC707883 Macaca mulatta ENSMMUG00000022413 I 0.718
SFRS2_PANTR Pan troglodytes ENSPTRG00000009692 I 0.718
SRSF2 Monodelphis domestica ENSMODG00000001575 I 0.718
Sfrs2 Rattus norvegicus ENSRNOG00000000248 I 0.718
ISCW001255 Ixodes scapularis ISCW001255 I 0.718
SRSF2 Taeniopygia guttata ENSTGUG00000007799 I 0.718
SRSF2 Tupaia belangeri ENSTBEG00000014339 I 0.718
SRSF2 Myotis lucifugus ENSMLUG00000009759 I 0.718
SRSF2 Pteropus vampyrus ENSPVAG00000014264 I 0.718
ENSPPYG00000008668 Pongo pygmaeus ENSPPYG00000008668 I 0.718
LOC100409845 Callithrix jacchus ENSCJAG00000013412 I 0.718
SRSF2 Canis familiaris ENSCAFG00000005147 I 0.718
SFRS2_BOVIN Bos taurus ENSBTAG00000018258 I 0.718
SRSF2 Microcebus murinus ENSMICG00000016956 I 0.718
Srsf2 Dipodomys ordii ENSDORG00000014460 I 0.718
SRSF2 Dasypus novemcinctus ENSDNOG00000000439 I 0.718
SRSF2 Anolis carolinensis ENSACAG00000008553 I 0.718
SRSF2 Macropus eugenii ENSMEUG00000016745 I 0.718
SRSF2 Homo sapiens ENSG00000161547 D 0.718
SRSF2 Gorilla gorilla ENSGGOG00000014378 I 0.718
GD22120 Drosophila simulans FBgn0193531 I 0.704
GM26218 Drosophila sechellia FBgn0181073 I 0.704
GJ16161 Drosophila virilis FBgn0203346 I 0.704
GK14626 Drosophila willistoni FBgn0216632 I 0.704
GI17122 Drosophila mojavensis FBgn0139866 I 0.704
AAH45229 Xenopus laevis AAH45229 I 0.704
srsf2 Xenopus tropicalis ENSXETG00000025271 I 0.704
gw1.5.1039.1 Lottia gigantea gw1.5.1039.1 I 0.704
SRSF2 Oryzias latipes ENSORLG00000001230 I 0.704
SC35 Drosophila melanogaster FBgn0040286 I 0.704
GA18884-RA Drosophila pseudoobscura FBgn0078884 I 0.704
GG10262 Drosophila erecta FBgn0102571 I 0.704
GF15672 Drosophila ananassae FBgn0092696 I 0.704
GH11678 Drosophila grimshawi FBgn0119158 I 0.704