CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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e_gw1.169.16.1
(
Postia placenta
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
e_gw1.169.16.1
T49808_0.6
JGI (2010-Jan-8)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
e_gw1.169.16.1
RRM
248
305
LFVCKLNPVTRDEDLELIFSRFGPIMSCQVIRDKKTGDSLQYAFIEFDKREDAEQVRV
Links
Other
RRM
family RBPs
Other
Postia placenta
RBPs
11 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
estExt_fgenesh3_pg.C_910016
Postia placenta
estExt_fgenesh3_pg.C_910016
N
0.775
fgenesh3_kg.4__300__1748_1_CCOZ_CCPA_CCPB_CCPC_EXTA
Heterobasidion annosum
fgenesh3_kg.4__300__1748_1_CCOZ_CCPA_CCPB_CCPC_EXTA
N
0.746
e_gww1.4.788.1
Laccaria bicolor
e_gww1.4.788.1
N
0.746
estExt_fgenesh2_kg.C_140159
Agaricus bisporus
estExt_fgenesh2_kg.C_140159
N
0.746
fgenesh1_pm.C_scaffold_1000049
Schizophyllum commune
fgenesh1_pm.C_scaffold_1000049
N
0.746
fgenesh2_pm.4_#_1016
Serpula lacrymans
fgenesh2_pm.4_#_1016
N
0.732
e_gww2.22.65.1
Phanerochaete chrysosporium
e_gww2.22.65.1
N
0.732
e_gw1.4.2113.1
Pleurotus ostreatus
e_gw1.4.2113.1
N
0.718
PPIL4
Tarsius syrichta
ENSTSYG00000009860
N
0.707
PPIL4
Dasypus novemcinctus
ENSDNOG00000000490
N
0.707
PPIL4
Tupaia belangeri
ENSTBEG00000001467
N
0.707