CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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e_gw1.20.707.1
(
Ostreococcus RCC809
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
e_gw1.20.707.1
T49847_0.6
JGI (2010-Jan-8)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
e_gw1.20.707.1
RRM
36
106
LYVGNVSFYTTETQMHALFSRCGAVRRIVVGLDRDRHTPCGFAFVEYETRSSAEACVRYLNGTTLDDREIR
Links
Other
RRM
family RBPs
Other
Ostreococcus RCC809
RBPs
11 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
e_gwEuk.20.430.1
Ostreococcus lucimarinus
e_gwEuk.20.430.1
N
0.817
e_gw1.14.00.253.1
Ostreococcus tauri
e_gw1.14.00.253.1
N
0.803
GJ23276
Drosophila virilis
FBgn0210378
N
0.704
GE25514
Drosophila yakuba
FBgn0242580
N
0.704
GD19204
Drosophila simulans
FBgn0190709
N
0.704
GK11244
Drosophila willistoni
FBgn0213255
N
0.704
GI23717
Drosophila mojavensis
FBgn0146442
N
0.704
Cbp20
Drosophila melanogaster
FBgn0022943
N
0.704
GF16759
Drosophila ananassae
FBgn0093780
N
0.704
GH15101
Drosophila grimshawi
FBgn0122576
N
0.704
GM15280
Drosophila sechellia
FBgn0170200
N
0.704