CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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e_gw1.2.304.1
(
Mycosphaerella graminicola
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
e_gw1.2.304.1
T49871_0.6
JGI (2010-Jan-8)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
e_gw1.2.304.1
RRM
214
282
VFVQQLAAALRTKQLKAFFEQSGPVVEAQIVKDRVSGRSKGVGYVEFADEESVQKALELTGQKLMNIPI
e_gw1.2.304.1
RRM
313
382
LYVGNIHFSIEESDLRDVFEPFGELEFVQLQKEDTGRSKGYGFVQFAKSDEAKIALEKMNGFEVAGRPIR
e_gw1.2.304.1
RRM
525
579
DMREECDKKYGSVVHLDTASGSTGGEVYVKFAAKDGGIKAVQGLNGRFFGGRRLT
Links
Other
RRM
family RBPs
Other
Mycosphaerella graminicola
RBPs
5 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
estExt_Genewise1Plus.C_320091
Mycosphaerella fijiensis
estExt_Genewise1Plus.C_320091
N
0.733
GSTUMT00004251001
Tuber melanosporum
GSTUMT00004251001
N
0.706
TERG_08096
Trichophyton rubrum
TERG_08096
N
0.701
BDBG_07521
Blastomyces dermatitidis
BDBG_07521
N
0.701
PABG_06048
Paracoccidioides brasiliensis
PABG_06048
N
0.701