CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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e_gw1.2.975.1
(
Mucor circinelloides
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
e_gw1.2.975.1
T49926_0.6
JGI (2010-Jan-8)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
e_gw1.2.975.1
RRM
5
75
VYVGNLSWNTTDETLRAAFSDAGQVLDAIVMRDRDTGRSRGFGFVTFADSASAQAAVEMYNEQELDGRRIK
Links
Other
RRM
family RBPs
Other
Mucor circinelloides
RBPs
14 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
eu2.Lbscf0010g02950
Laccaria bicolor
eu2.Lbscf0010g02950
N
0.789
estExt_fgenesh1_kg.C_80148
Schizophyllum commune
estExt_fgenesh1_kg.C_80148
N
0.775
estExt_fgenesh2_kg.C_50272
Agaricus bisporus
estExt_fgenesh2_kg.C_50272
N
0.775
fgenesh2_pm.C_scaffold_3000490
Heterobasidion annosum
fgenesh2_pm.C_scaffold_3000490
N
0.761
FGSG_12376
Fusarium graminearum
FGSG_12376
N
0.746
estExt_fgenesh1_pm.C_50301
Pleurotus ostreatus
estExt_fgenesh1_pm.C_50301
N
0.746
fgenesh1_pm.C_scaffold_15000005
Phanerochaete chrysosporium
fgenesh1_pm.C_scaffold_15000005
N
0.746
estExt_Genewise1Plus.C_1610001
Postia placenta
estExt_Genewise1Plus.C_1610001
N
0.732
estExt_fgeneshPB_pm.C_20123
Phycomyces blakesleeanus
estExt_fgeneshPB_pm.C_20123
N
0.732
AFLA_107810
Aspergillus flavus
CADAFLAG00004517
N
0.718
AO090023000366
Aspergillus oryzae
CADAORAG00007500
N
0.718
CC1G_07391
Coprinopsis cinerea
CC1G_07391
N
0.718
FGSG_11064
Fusarium graminearum
FGSG_11064
N
0.718
UM02412
Ustilago maydis
UM02412
N
0.718