CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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estExt_fgenesh2_pg.C_1920051
(
Branchiostoma floridae
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
estExt_fgenesh2_pg.C_1920051
T50810_0.6
JGI (2010-Jan-8)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
estExt_fgenesh2_pg.C_1920051
RRM
121
198
VYVSGLPTDITDDEFKDLMQKCGIIMEDMETGQPKFKLYRDQNGQLKGDGRCCYLKRESVDLALQILDNYEFRSHTIH
estExt_fgenesh2_pg.C_1920051
RRM
271
327
ISDDLRSECEKFGIVKKVLIFDRHPDGVASVAYKEAEMADAAVAALNGRWFGGRQLN
Links
Other
RRM
family RBPs
Other
Branchiostoma floridae
RBPs
2 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
estExt_gwp.C_3100013
Branchiostoma floridae
estExt_gwp.C_3100013
N
1.000
HTATSF1
Macropus eugenii
ENSMEUG00000004133
N
0.704