CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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estExt_Genewise1.C_10655
(
Volvox carteri
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
estExt_Genewise1.C_10655
T51171_0.6
JGI (2010-Jan-8)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
estExt_Genewise1.C_10655
RRM
12
79
IFVGNLPIDVREKELDEIFYKFGRIRMIDIKKPARPPGFAFIEFDDPRSAEEAARRRNNYEFAGMRMR
estExt_Genewise1.C_10655
RRM
110
175
LYVKGLPRSASWQDLKDFVRRVCKPLYTEIFKDHRDNVLGVVEFESKDDMKAALRKLDDSEFTNPF
Links
Other
RRM
family RBPs
Other
Volvox carteri
RBPs
1 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
PIE_chlre3.38.118.3.31
Chlamydomonas reinhardtii
PIE_chlre3.38.118.3.31
N
0.910