CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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estExt_Genewise1.C_10885
(
Mycosphaerella fijiensis
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
estExt_Genewise1.C_10885
T51172_0.6
JGI (2010-Jan-8)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
estExt_Genewise1.C_10885
RRM
117
186
IYIGNLFFEVTAPQLEAEFGRFGEVTNSRIVTDTNGRSKGFGFIEFANRDDADRAIRELDQKVFEGRRMS
estExt_Genewise1.C_10885
RRM
210
280
LFIGNMSYQMSDRDLNDLFRQIRNVLDVRVAIDRRSGQPRGFAHADFVDEASATKAKELLEQKVVYGRQLR
Links
Other
RRM
family RBPs
Other
Mycosphaerella fijiensis
RBPs
2 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
estExt_fgenesh1_kg.C_chr_10846
Mycosphaerella graminicola
estExt_fgenesh1_kg.C_chr_10846
N
0.759
PTRG_08115
Pyrenophora tritici repentis
PTRG_08115
N
0.709