CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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estExt_Genewise1.C_140383
(
Neurospora tetrasperma
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
estExt_Genewise1.C_140383
T51197_0.6
JGI (2010-Jan-8)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
estExt_Genewise1.C_140383
RRM
629
695
VFVHNLPEGITQTKLRQFFREYGHINNIDLQKSEGAPAVALIEFKSPEDARTALLRDGKRLGESVIQ
estExt_Genewise1.C_140383
RRM
704
772
LFVTNYPPEADEQSIRDLFKHCGDIHSIRFPSLKYNTKRRFCYVSFRDRSAAAAATQLDGKPLEGGKYK
estExt_Genewise1.C_140383
RRM
796
865
LHVNNLPRAASEEDVEGLFQKAGNVVSVRLTRNMAGVSTGTAFVVMETKEQAAKAIEILDKVIFGNHPLK
estExt_Genewise1.C_140383
RRM
912
976
IAILGIPDTMNDARVRSIVAPIGAINKLVLHPQHGGAVVEFADAATAGKASLVINSTEIEGGKKL
Links
Other
RRM
family RBPs
Other
Neurospora tetrasperma
RBPs
2 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
NCU09048
Neurospora crassa
NCU09048
N
0.993
e_gw1.8.500.1
Neurospora discreta
e_gw1.8.500.1
N
0.985