CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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How to cite
estExt_Genewise1.C_210068
(
Chlorella NC64A
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
estExt_Genewise1.C_210068
T51220_0.6
JGI (2010-Jan-8)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
estExt_Genewise1.C_210068
RRM
19
89
LYVGGLESTVNEAALHSAFIPFGEIKEVSLPLDHATGTHRGFGFVEFEAAEDAADAMDNMHNSELYGRVLR
Links
Other
RRM
family RBPs
Other
Chlorella NC64A
RBPs
4 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
estExt_Genewise1Plus.C_30313
Volvox carteri
estExt_Genewise1Plus.C_30313
N
0.803
estExt_Genewise1Plus.C_190263
Chlorella vulgaris
estExt_Genewise1Plus.C_190263
N
0.789
estExt_Genemark1.C_190214
Coccomyxa C 169
estExt_Genemark1.C_190214
N
0.789
e_gwW.26.127.1
Chlamydomonas reinhardtii
e_gwW.26.127.1
N
0.746