CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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estExt_Genewise1Plus.C_14385
(
Thielavia terrestris
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
estExt_Genewise1Plus.C_14385
T51382_0.6
JGI (2010-Jan-8)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
estExt_Genewise1Plus.C_14385
RRM
138
207
VFVRNLVFEVTEEHLQKAFSKYGEVASTFIARDPRGLSKGFGFVTFTTPEAVETACSQVNGSFWHGRRIT
estExt_Genewise1Plus.C_14385
RRM
233
303
LFIGNIPYETTDAELNRLFRGIENLRDVRVAVDRTTGWPRGFAHADFTSIEAAIEAKKRLEGTMLGNRLLR
Links
Other
RRM
family RBPs
Other
Thielavia terrestris
RBPs
5 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
estExt_Genewise1Plus.C_23167
Myceliophthora thermophila
estExt_Genewise1Plus.C_23167
N
0.787
CHGG_05893
Chaetomium globosum
CHGG_05893
N
0.759
e_gw1.49.59.1
Neurospora tetrasperma
e_gw1.49.59.1
N
0.709
NCU11552
Neurospora crassa
NCU11552
N
0.709
fgenesh3_pm.C_scaffold_4000219
Neurospora discreta
fgenesh3_pm.C_scaffold_4000219
N
0.709