CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
Home
Tools
Download cart
Bulk downloads
Database stats
Contact us
Help
How to cite
eu2.Lbscf0006g07890
(
Laccaria bicolor
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
eu2.Lbscf0006g07890
T51647_0.6
JGI (2010-Jan-8)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
eu2.Lbscf0006g07890
RRM
118
189
IVIKNIPFNVKRETLLDIIASLSIPTPYAFNYHLDQQGSFRGLAFANFRQSADADAVVVALNGFDVQGRKLR
Links
Other
RRM
family RBPs
Other
Laccaria bicolor
RBPs
9 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
estExt_fgenesh2_kg.C_110664
Serpula lacrymans
estExt_fgenesh2_kg.C_110664
N
0.972
estExt_fgenesh1_kg.C_20128
Schizophyllum commune
estExt_fgenesh1_kg.C_20128
N
0.972
e_gw1.1.308.1
Pleurotus ostreatus
e_gw1.1.308.1
N
0.958
estExt_Genewise1Plus.C_1440061
Postia placenta
estExt_Genewise1Plus.C_1440061
N
0.944
estExt_Genewise1Plus.C_1810032
Postia placenta
estExt_Genewise1Plus.C_1810032
N
0.944
estExt_fgenesh3_kg.C_20294
Heterobasidion annosum
estExt_fgenesh3_kg.C_20294
N
0.944
CC1G_05181
Coprinopsis cinerea
CC1G_05181
N
0.944
e_gw1.2.1342.1
Agaricus bisporus
e_gw1.2.1342.1
N
0.944
EDP42624.1
Malassezia globosa
EDP42624.1
N
0.736