CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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fgenesh1_pg.sca_2_chr3_3_0000802
(
Nectria haematococca
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
fgenesh1_pg.sca_2_chr3_3_0000802
T51981_0.6
JGI (2010-Jan-8)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
fgenesh1_pg.sca_2_chr3_3_0000802
RRM
197
265
VFVGNLPFTATADTIQAHFASLSPIHVRCMSDPNDSKPCRGFAFVEFAKVWHMRTCLDKFHHSMFEDGV
Links
Other
RRM
family RBPs
Other
Nectria haematococca
RBPs
3 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
FVEG_02446
Fusarium verticillioides
FVEG_02446
N
0.870
FOXG_03574
Fusarium oxysporum
FOXG_03574
N
0.870
FGSG_08856
Fusarium graminearum
FGSG_08856
N
0.857