CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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fgenesh1_pm.C_scaffold_2000188
(
Trichoderma atroviride
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
fgenesh1_pm.C_scaffold_2000188
T52072_0.6
JGI (2010-Jan-8)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
fgenesh1_pm.C_scaffold_2000188
RRM
114
184
VFVANLSQNFDDGKLEVEVTKYFSQFGTVFVKIRRDGRQMPFAFCQFTSDTDAEKAEKYGSGAMILGRPCR
fgenesh1_pm.C_scaffold_2000188
RRM
295
370
AYFGNLPLTMTSDGLKSLASSCGKVVCAELATKEVPQTGGKTITTCFGFVEFTRPDSVDNAIMSYHRKPINGHVVK
Links
Other
RRM
family RBPs
Other
Trichoderma atroviride
RBPs
2 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
e_gw1.1.891.1
Trichoderma virens
e_gw1.1.891.1
N
0.796
fgenesh5_pg.C_scaffold_6000404
Trichoderma reesei
fgenesh5_pg.C_scaffold_6000404
N
0.782