CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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fgenesh2_pm.C_sca_60000004
(
Lottia gigantea
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
fgenesh2_pm.C_sca_60000004
T52291_0.6
JGI (2010-Jan-8)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
fgenesh2_pm.C_sca_60000004
RRM
73
144
LYVGNLTWWTTDEDLSDAIVSIGVSDLLEVKFYENRANGQSKGFALVSVGSEASSRLIFEKLARKEFYGQAP
Links
Other
RRM
family RBPs
Other
Lottia gigantea
RBPs
3 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
CPSF6
Gasterosteus aculeatus
ENSGACG00000019685
N
0.722
CPSF6
Takifugu rubripes
ENSTRUG00000016461
N
0.722
CPSF6
Tetraodon nigroviridis
ENSTNIG00000007576
N
0.708