CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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Glyma02g02640.1
(
Glycine max
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
Glyma02g02640.1
T52588_0.6
JGI (2010-Jan-8)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
Glyma02g02640.1
RRM
1
51
MGLPQDCSVLDLKSRFEIYGAISRIRIDRDAVGYITYRTKDSADASIAADL
Links
Other
RRM
family RBPs
Other
Glycine max
RBPs
4 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
ppa011676m
Prunus persica
ppa011676m
N
0.796
MDP0000281696
Malus x domestica
MDP0000281696
N
0.759
Cucsa.285420
Cucumis sativus
Cucsa.285420
N
0.759
cassava1669.valid.m1
Manihot esculenta
cassava1669.valid.m1
N
0.714