CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
Home
Tools
Download cart
Bulk downloads
Database stats
Contact us
Help
How to cite
Glyma13g03840.1
(
Glycine max
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
Glyma13g03840.1
T52820_0.6
JGI (2010-Jan-8)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
Glyma13g03840.1
RRM
68
125
LKVEESILRKAFSPFGEIVKITTFPGRSYAFVRFRSLTSACSARDDLKGKLFGNPRVH
Links
Other
RRM
family RBPs
Other
Glycine max
RBPs
7 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
Glyma20g10360.1
Glycine max
Glyma20g10360.1
N
0.966
cassava5529.m1
Manihot esculenta
cassava5529.m1
N
0.828
POPTR_0014s17010
Populus trichocarpa
POPTR_0014s17010
N
0.810
Cucsa.120120
Cucumis sativus
Cucsa.120120
N
0.793
ppa001723m
Prunus persica
ppa001723m
N
0.793
MDP0000126227
Malus x domestica
MDP0000126227
N
0.793
Medtr3g111300
Medicago truncatula
Medtr3g111300
N
0.759