CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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gw1.34.29.1
(
Emiliania huxleyi
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
gw1.34.29.1
T53240_0.6
JGI (2010-Jan-8)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
gw1.34.29.1
RRM
25
95
LYIGNLSFYTTEEQLYEFFGKTGEVRRVVMGLDRFSKTPCGFCFVEYYRRQDTEDAVRFLNGMKLDERVVR
Links
Other
RRM
family RBPs
Other
Emiliania huxleyi
RBPs
6 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
gw1.233.10.1
Emiliania huxleyi
gw1.233.10.1
N
1.000
SPPG_00516
Spizellomyces punctatus
SPPG_00516
N
0.732
MGG_06296
Magnaporthe oryzae
MGG_06296
N
0.704
estExt_fgenesh1_kg.C_sca_10_chr8_2_00014
Nectria haematococca
estExt_fgenesh1_kg.C_sca_10_chr8_2_00014
N
0.704
e_gw1.3.1174.1
Thielavia terrestris
e_gw1.3.1174.1
N
0.704
GLRG_00177
Colletotrichum graminicola
GLRG_00177
N
0.704