CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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mgf019401m
(
Mimulus guttatus
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
mgf019401m
T53776_0.6
JGI (2010-Jan-8)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
mgf019401m
RRM
4
73
ICVKNFPKYVAEVRLREFFSQKGEVTDAKLMRTKDGKSRQFGFVGFRTEHEAEEATNYFNKSFLDTCRIT
mgf019401m
RRM
276
346
LFIRNLPYTTTEEELEDHFSKYGTISQVHIFIDKDTRRSKGFAYVLFALPESAARALEEMDSSIFQGRLLH
mgf019401m
RRM
472
536
ILVKNLPYGSSQSELSNMFGKFGSLDKIILPPTKTMALVIFLEPANARAAFRGLAYKRYKDAPLY
mgf019401m
RRM
589
661
LYVKNLNFRSSDENLKTHFAEHMKGGNILSVRKHMKNGKNVSMGFGFIEFDSIDTTVTVCRDLQGTVLDVHAL
mgf019401m
RRM
685
721
ICVKNLPKYVAEDRLREFFSQKGEVTDAKLMRTPSHL
Links
Other
RRM
family RBPs
Other
Mimulus guttatus
RBPs
3 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
mgf006636m
Mimulus guttatus
mgf006636m
N
0.798
mgf010702m
Mimulus guttatus
mgf010702m
N
0.795
mgf002385m
Mimulus guttatus
mgf002385m
N
0.734