CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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Medtr7g107720
(
Medicago truncatula
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
Medtr7g107720
T54589_0.6
PlantGDB (2010-Oct-15)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
Medtr7g107720.1
RRM
19
86
VYFDNMSPQVTESVIRTALDQFASVKSVKFIPNYLGPSSMPQCALVELDSAKKVKEVIAMIKQYPFMM
Links
Other
RRM
family RBPs
Other
Medicago truncatula
RBPs
4 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
Medtr3g022190
Medicago truncatula
Medtr3g022190
N
0.985
Medtr3g029910
Medicago truncatula
Medtr3g029910
N
0.971
Glyma11g08650.1
Glycine max
Glyma11g08650.1
N
0.812
LjSGA_043446.1
Lotus japonicus
LjSGA_043446.1
N
0.794