CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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9187_YGR250C
(
Saccharomyces mikatae
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
9187_YGR250C
T55316_0.6
Superfamily (2011-Oct-26)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
9187_YGR250C
RRM
196
266
IFVGGIAKSLSIGELSFLFSKYGTILSMKLIYDRTKGEPNGYGFISYPLGSQASLCIKELNGRVVNGSTLF
9187_YGR250C
RRM
353
411
SFNDEGSIDSNKLSNNTNGPAQDEEMLKGYGFIKLINHEQALAVIETFNGFMWHGHRLV
9187_YGR250C
RRM
543
583
LYVKHIPLSWTDEDLYDFYKTFGEIISVKVITVGGSKNKYR
9187_YGR250C
RRM
588
632
DSSSDSDLPVGSSRGYGFVSFESPLDAAKAILNTDGYQVSKEQVL
Links
Other
RRM
family RBPs
Other
Saccharomyces mikatae
RBPs
3 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
9299_YGR250C
Saccharomyces paradoxus
9299_YGR250C
N
0.935
YGR250C
Saccharomyces cerevisiae
YGR250C
N
0.931
Skud_Contig1999.8
Saccharomyces kudriavzevii
Skud_Contig1999.8
N
0.881