CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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GSPATP00006936001
(
Paramecium tetraurelia
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
GSPATP00006936001
T56759_0.6
Superfamily (2011-Oct-26)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
GSPATP00006936001
RRM
27
83
PANLNPEYFSSLMSQYGPVANVKILHRSLMECRVLVEMANIEAAKNAKKALDQLSSN
GSPATP00006936001
RRM
165
226
GISGKELDAHKLYNIFSNFGNVDKIILINLKNFALVKYLKEDQAYFVYQNCQNLSFFESSLT
GSPATP00006936001
RRM
275
342
LHISNLKKVSSNAETMWDIFSEFGVVEAVKVLNSQFKFMCLIKMETLKQALEVMALMHNEEVDGRNIQ
Links
Other
RRM
family RBPs
Other
Paramecium tetraurelia
RBPs
3 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
GSPATP00012866001
Paramecium tetraurelia
GSPATP00012866001
N
0.878
GSPATP00002080001
Paramecium tetraurelia
GSPATP00002080001
N
0.750
GSPATP00004607001
Paramecium tetraurelia
GSPATP00004607001
N
0.713