CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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Kwal_23486
(
Kluyveromyces waltii
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
Kwal_23486
T57144_0.6
Superfamily (2011-Oct-26)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
Kwal_23486
RRM
42
112
LYVGELDPSVTEALLYDLFSPIGSVSSIRVCRDAITKTSLGYAYVNFHDHNAGTTAIEKLNYTPIKGRPCR
Kwal_23486
RRM
130
199
VFIKNLHPAIDNKALHDTFSVFGNILSCKIATDETGKSRKFGFVHFEEEEAAKEAIDAINGMLLNGLEVY
Kwal_23486
RRM
223
292
VYVKNIDPETKQDEFEKLFSQYGAITSAVLETDNEGKLRGFGFVNFEDHNAAAKAVEELNDTDFNGQKLY
Kwal_23486
RRM
326
395
LFVKNLDDSIDDEKLQEEFAPFGTITSVKVMRDDAGSSKGFGFVCFSTPEEATKAITEKNQQIVAGKPLY
Links
Other
RRM
family RBPs
Other
Kluyveromyces waltii
RBPs
20 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
KLTH0G14344g
Kluyveromyces thermotolerans
KLTH0G14344g
N
0.947
SAKL0H17952g
Lachancea kluyveri
SAKL0H17952g
N
0.868
PAB1
Ashbya gossypii
PAB1
N
0.815
ZYRO0B11660g
Zygosaccharomyces rouxii
ZYRO0B11660g
N
0.798
A7TH03_VANPO
Vanderwaltozyma polyspora
A7TH03_VANPO
N
0.797
Scas_Contig576.7
Saccharomyces castellii
Scas_Contig576.7
N
0.794
6197_YER165W
Saccharomyces mikatae
6197_YER165W
N
0.790
6731_YER165W
Saccharomyces paradoxus
6731_YER165W
N
0.786
PAB1
Saccharomyces cerevisiae
YER165W
N
0.786
7056_YER165W
Saccharomyces bayanus
7056_YER165W
N
0.769
KLLA0C17600g
Kluyveromyces lactis
KLLA0C17600g
N
0.765
CAGL0L11792g
Candida glabrata
CAGL0L11792g
N
0.762
CTRG_04791
Candida tropicalis
CTRG_04791
N
0.737
LELG_01550
Lodderomyces elongisporus
LELG_01550
N
0.730
PGUG_04322
Candida guilliermondii
PGUG_04322
N
0.719
orf19.3037
Candida albicans
orf19.3037
N
0.719
Cd36_03170
Candida dubliniensis
Cd36_03170
N
0.715
estExt_gwp_genewisePlus_human.C_chr_6.11045
Pichia stipitis
estExt_gwp_genewisePlus_human.C_chr_6.11045
N
0.705
DEHA0G13255g
Debaryomyces hansenii
DEHA0G13255g
N
0.705
CPAG_00898
Candida parapsilosis
CPAG_00898
N
0.701