CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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MDP0000169888
(
Malus x domestica
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
MDP0000169888
T57379_0.6
Superfamily (2011-Oct-26)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
MDP0000169888
RRM
1
54
MYDIFGKYGXIRQIRIETNKDTKGTAFVVYEDIYDXKTAVDHLSGFNVANXYLT
Links
Other
RRM
family RBPs
Other
Malus x domestica
RBPs
8 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
B9GG60_POPTR
Populus trichocarpa
POPTR_0001s28000
N
0.706
29868.m000351
Ricinus communis
29868.m000351
N
0.706
cassava30358.valid.m1
Manihot esculenta
cassava30358.valid.m1
N
0.706
GSVIVG00037329001
Vitis vinifera
GSVIVG00037329001
N
0.706
PK21780.1
Cannabis sativa
PK21780.1
N
0.706
ppa013405m
Prunus persica
ppa013405m
N
0.706
ppa013407m
Prunus persica
ppa013407m
N
0.706
MDP0000185506
Malus x domestica
MDP0000185506
N
0.706