CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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MDP0000748479
(
Malus x domestica
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
MDP0000748479
T57719_0.6
Superfamily (2011-Oct-26)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
MDP0000748479
RRM
231
300
VFAYQMPLKATERDVYELFSKAGKVRDVRLIMDRNSRRSKGVGYIEFYDAMSVPMAIAXSGQLLLGQPVM
MDP0000748479
RRM
333
403
LYVGNLHFNMTETHLREIFEPFGPVELVQLPLDLETGQCKGFGFVQFAHLEHARAAQSLNGKLEIAGRTIK
Links
Other
RRM
family RBPs
Other
Malus x domestica
RBPs
6 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
Cucsa.101320
Cucumis sativus
Cucsa.101320
N
0.950
GRMZM2G076597
Zea mays
GRMZM2G076597
N
0.794
Cucsa.370400
Cucumis sativus
Cucsa.370400
N
0.794
MDP0000139791
Malus x domestica
MDP0000139791
N
0.787
cassava37706.valid.m1
Manihot esculenta
cassava37706.valid.m1
N
0.759
cassava37707.valid.m1
Manihot esculenta
cassava37707.valid.m1
N
0.759