CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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Minc15332
(
Meloidogyne incognita
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
Minc15332
T57861_0.6
Superfamily (2011-Oct-26)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
Minc15332a
RRM
7
69
LYVRNLKEIVTEEQLTSLFATHGKIDKVKRIKDYAFIHFEERESATKALAALNKSELEGVEIE
Minc15332b
RRM
244
303
VYIGQIPKEIYEDTLVPLFEQAGQLYDLRIMMDPVLGKSRGYGFLIFCKKADAIEAAKKI
Minc15332e
RRM
244
315
VYIGQIPKEIYEDTLVPLFEQAGQLYDLRIMMDPVLGKSRGYGFLIFCKKADAIEAAKKFDGHEILPGKPLK
Minc15332e
RRM
325
393
LFLGNIPKSKSKDEILEELKKHADNIDDVIIYTNPDSQDGRKNRGFCFIDFNDHKTASDVKRRITMGKI
Minc15332f
RRM
7
69
LYVRNLKEIVTEEQLTSLFATHGKIDKVKRIKDYAFIHFEERESATKALAALNKSELEGVEIE
Links
Other
RRM
family RBPs
Other
Meloidogyne incognita
RBPs
3 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
Minc15331
Meloidogyne incognita
Minc15331
N
1.000
Minc15433
Meloidogyne incognita
Minc15433
N
0.984