CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
Home
Tools
Download cart
Bulk downloads
Database stats
Contact us
Help
How to cite
Minc15342
(
Meloidogyne incognita
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
Minc15342
T57862_0.6
Superfamily (2011-Oct-26)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
Minc15342a
RRM
32
106
LYVGNIPFGSNEDTMLDFFNQQMHLCGLAQAPGNPVIACQINLDKNFAFIEFRSIDETTAGMAFDGVNFTGQQLK
Minc15342a
RRM
139
209
LFIGGLPNHLTSDQVKELLSAFGQLKAFNLVMDSVTGFSKGYAFCEYLDSTLTDQAIVGLNGMQLGDNRLL
Minc15342a
RRM
270
314
LEDIRDECNKYGNVISLEIPRPGYEERGVGKFLFNSEQVKAATRS
Minc15342b
RRM
17
61
APGNPVIACQINLDKNFAFIEFRSIDETTAGMAFDGVNFTGQQLK
Minc15342b
RRM
94
164
LFIGGLPNHLTSDQVKELLSAFGQLKAFNLVMDSVTGFSKGYAFCEYLDSTLTDQAIVGLNGMQLGDNRLL
Minc15342b
RRM
225
269
LEDIRDECNKYGNVISLEIPRPGYEERGVGKFLFNSEQVKAATRS
Links
Other
RRM
family RBPs
Other
Meloidogyne incognita
RBPs
3 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
Minc05905
Meloidogyne incognita
Minc05905
N
0.830
Minc05098
Meloidogyne incognita
Minc05098
N
0.830