CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
Home
Tools
Download cart
Bulk downloads
Database stats
Contact us
Help
How to cite
Pa_7_7110
(
Podospora anserina
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
Pa_7_7110
T57952_0.6
Superfamily (2011-Oct-26)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
Pa_7_7110
RRM
398
461
AYIKFVTDKVKEADLKATLEAFGEVVYFDINRTKNCAFVEFKTPAGYNAAAAANPHTVNGENIV
Links
Other
RRM
family RBPs
Other
Podospora anserina
RBPs
9 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
estExt_fgenesh3_kg.C_50040
Neurospora discreta
estExt_fgenesh3_kg.C_50040
N
0.844
NCU07574
Neurospora crassa
NCU07574
N
0.844
estExt_fgenesh2_pg.C_30224
Thielavia terrestris
estExt_fgenesh2_pg.C_30224
N
0.828
CHGG_03190
Chaetomium globosum
CHGG_03190
N
0.812
FGSG_06706
Fusarium graminearum
FGSG_06706
N
0.766
GLRG_00126
Colletotrichum graminicola
GLRG_00126
N
0.766
estExt_Genewise1.C_41468
Myceliophthora thermophila
estExt_Genewise1.C_41468
N
0.750
fgenesh1_pg.sca_3_chr4_2_0000797
Nectria haematococca
fgenesh1_pg.sca_3_chr4_2_0000797
N
0.734
MGG_04667
Magnaporthe oryzae
MGG_04667
N
0.719