CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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XP_001191950.1
(
Strongylocentrotus purpuratus
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
XP_001191950.1
T58941_0.6
Superfamily (2011-Oct-26)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
XP_001191950.1
RRM
4
74
LFAGDLGNEVTEDTLTKVFGSYPSYIRCKIIRDKRTNKTKGYGFVSFKDPRDFVQAVKDWNGKYVGNRPIK
Links
Other
RRM
family RBPs
Other
Strongylocentrotus purpuratus
RBPs
6 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
XP_001184429.1
Strongylocentrotus purpuratus
XP_001184429.1
N
1.000
XP_784687.2
Strongylocentrotus purpuratus
XP_784687.2
N
1.000
XP_786306.2
Strongylocentrotus purpuratus
XP_786306.2
N
1.000
estExt_fgenesh2_pg.C_7640002
Branchiostoma floridae
estExt_fgenesh2_pg.C_7640002
I
0.704
76581
Helobdella robusta
76581
I
0.704
estExt_fgenesh2_pg.C_360096
Branchiostoma floridae
estExt_fgenesh2_pg.C_360096
I
0.704