CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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XP_001201782.1
(
Strongylocentrotus purpuratus
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
XP_001201782.1
T58987_0.6
Superfamily (2011-Oct-26)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
XP_001201782.1
RRM
52
122
VYVSHIPHGFYEPQMKKFFSQFGNIKRLRLSRSKKSGKSKGYAYIEFEYDEVAKVVTETMHNYLMYQKLLK
Links
Other
RRM
family RBPs
Other
Strongylocentrotus purpuratus
RBPs
4 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
XP_793694.2
Strongylocentrotus purpuratus
XP_793694.2
N
1.000
estExt_gwp.C_4020036
Branchiostoma floridae
estExt_gwp.C_4020036
N
0.718
ENSCSAVG00000001363
Ciona savignyi
ENSCSAVG00000001363
N
0.718
estExt_fgenesh2_pg.C_7810009
Branchiostoma floridae
estExt_fgenesh2_pg.C_7810009
N
0.718