CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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XP_002489470.1
(
Pichia pastoris
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRM_1)
IPR000504
XP_002489470.1
T59154_0.6
Superfamily (2011-Oct-26)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
XP_002489470.1
RRM
223
293
LFVCKLNPITTAEDLGVVFSRFGKITGSEIVKDRSTGKSKTYGFIEFADVESCEEAYRKMDNVIIDDRRIH
Links
Other
RRM
family RBPs
Other
Pichia pastoris
RBPs
3 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
amel4_ncbi_hmm11961
Apis mellifera
amel4_ncbi_hmm11961
N
0.732
amel4_ncbi_hmm35613
Apis mellifera
amel4_ncbi_hmm35613
N
0.732
nasonia_NCBI_hmm783174
Nasonia vitripennis
nasonia_NCBI_hmm783174
N
0.704