CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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CPSG_09821
(
Coccidioides posadasii
)
S1
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00575 (S1)
IPR003029
CPSG_09821
T59891_0.6
Broad (2011-Oct-27)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
CPSG_09821T0
S1
1111
1184
TLAEGMVVPVTIKRITDDHIDGKLDCGVDVLIPEMELTDRYDIPVRSLYSIHQTVPAKLLYLNRKAFIANASLR
Links
Other
S1
family RBPs
Other
Coccidioides posadasii
RBPs
4 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
CIMG_00540
Coccidioides immitis
CIMG_00540
N
1.000
fgenesh1_pg.00118_#_32
Aspergillus carbonarius
fgenesh1_pg.00118_#_32
N
0.797
An11g10710
Aspergillus niger
CADANGAG00009388
N
0.784
ATEG_08951
Aspergillus terreus
CADATEAG00007910
N
0.770