CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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SS1G_07770
(
Sclerotinia sclerotiorum
)
S1
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00575 (S1)
IPR003029
SS1G_07770
T60031_0.6
Broad (2011-Oct-27)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
SS1T_07770
S1
77
159
RPFKGETVDAIVTSVNAVGFFADAGPLPLFVSAHLIPRDIKFDANATPPQFTNNEDSVIEPGTHVRVKIIGTRPEVGAMFAIG
Links
Other
S1
family RBPs
Other
Sclerotinia sclerotiorum
RBPs
10 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
BC1G_13674
Botrytis cinerea
BC1G_13674
N
1.000
estExt_Genewise1.C_40674
Trichoderma atroviride
estExt_Genewise1.C_40674
N
0.795
estExt_Genewise1.C_51123
Trichoderma virens
estExt_Genewise1.C_51123
N
0.795
e_gw1.12.283.1
Trichoderma reesei
e_gw1.12.283.1
N
0.795
GLRG_01598
Colletotrichum graminicola
GLRG_01598
N
0.771
FGSG_01220
Fusarium graminearum
FGSG_01220
N
0.771
FVEG_01347
Fusarium verticillioides
FVEG_01347
N
0.759
FOXG_00169
Fusarium oxysporum
FOXG_00169
N
0.759
VDAG_04392
Verticillium dahliae
VDAG_04392
N
0.735
VDBG_04852
Verticillium albo atrum
VDBG_04852
N
0.735