CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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SRBD1
(
Gasterosteus aculeatus
)
S1
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00575 (S1)
IPR003029
ENSGACG00000010794
T60373_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSGACP00000014292
S1
545
622
DLRVGAVLTGRVDNTALFGAFVDIGVGRSGLIHKSNITLDKLPASQRRRSLALGPGERVEVRVLDVDPHRGRIGLDLI
Links
Other
S1
family RBPs
Other
Gasterosteus aculeatus
RBPs
4 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
SRBD1
Tetraodon nigroviridis
ENSTNIG00000007464
N
0.936
SRBD1
Takifugu rubripes
ENSTRUG00000007080
N
0.897
SRBD1
Oryzias latipes
ENSORLG00000004427
N
0.859
srbd1
Danio rerio
ENSDARG00000079827
N
0.782