CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
Home
Tools
Download cart
Bulk downloads
Database stats
Contact us
Help
How to cite
ENSPPYG00000002621
(
Pongo pygmaeus
)
S1
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00575 (S1)
IPR003029
ENSPPYG00000002621
T60499_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSPPYP00000003050
S1
80
134
LCEGMRILGCVKEVNELELVISLPNGLQGFVQVTEICDAYTKKLNEQVTQEQPLK
ENSPPYP00000003050
S1
183
258
ALKPGMLLTGTISSLEDHGYLVDIGVDGTRAFLPLLKAQEYIRQKNKGAKLKVGQYLNCIVEKVKGNGGVVSLSIG
ENSPPYP00000003050
S1
278
346
LLPGLVVKAQVQKVTPFGLTLNFLTFFTGVVDFMHLDPKKAGTYFSNQAVRACILCVHPRTRVVRLSLR
ENSPPYP00000003050
S1
454
526
AKPGLQIHGFIIRVKDYGCIVKFYNNVQGLVPKHELSTEYIPDPERVFYTGQVVKVVVLNCEPSKERMLLSFK
ENSPPYP00000003050
S1
547
605
AINVGQLVDVKVLEKTKDGLEVAVLPHNIRAFLPTSHLSDHVANGPLLHHWLQAGDILH
ENSPPYP00000003050
S1
640
713
EIHPGMLLTGFVKSIKDYGVFIQFPSGLSGLAPKAIMSDKFVTSTSDHFVEGQTVVAKVTNVDEEKQRMLLSLR
ENSPPYP00000003050
S1
947
1015
TLSIGDMVTGTVKSIKPTHVVVTLEDGIIGCIHASHILDDVPEGTSPTTKLKVGKMVTARVIGGRDMKT
ENSPPYP00000003050
S1
1141
1212
KLEEGEVAMGRVVKVTPNEGLTVSFPFGKIGTVSIFHMSDSYSEMPLEDFVPQKVVRCYILSTADNVLTLSL
ENSPPYP00000003050
S1
1235
1310
DIKEGQLLRGYIGSIQPHGVFFRLGPSVVGLARYSHVSQHSLSKKALYNKHLPEGKLLTARVLRLNHQKNLVELSF
Links
Other
S1
family RBPs
Other
Pongo pygmaeus
RBPs
1 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
PDCD11
Oryctolagus cuniculus
ENSOCUG00000006312
N
0.702