CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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How to cite
LOC_Os01g67570
(
Oryza sativa
)
S1
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00575 (S1)
IPR003029
LOC_Os01g67570
T60700_0.6
Ensembl (2011-Oct-26)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
LOC_Os01g67570.1
S1
260
320
FYPGQICRGRVISVHLYQGAFVDIGCVHDGWVPIKGNDWYWIRHHIRPGMEVHVEILAKRD
Links
Other
S1
family RBPs
Other
Oryza sativa
RBPs
7 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
BRADI2G57887
Brachypodium distachyon
BRADI2G57887
N
0.869
PK11843.1
Cannabis sativa
PK11843.1
N
0.820
MDP0000294429
Malus x domestica
MDP0000294429
N
0.803
Cucsa.157490
Cucumis sativus
Cucsa.157490
N
0.803
mgf006313m
Mimulus guttatus
mgf006313m
N
0.803
ppa002434m
Prunus persica
ppa002434m
N
0.787
B9IF66_POPTR
Populus trichocarpa
POPTR_0015s10360
N
0.754