CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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fgeneshTA2_pm.C_scaffold_6000027
(
Trichoplax adhaerens
)
S1
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00575 (S1)
IPR003029
fgeneshTA2_pm.C_scaffold_6000027
T61275_0.6
JGI (2010-Jan-8)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No direct experiments
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
fgeneshTA2_pm.C_scaffold_6000027
S1
78
161
KPFPGEVVDGIVTQLNKVGLFVEVGPLTCFISKYSIPRDMFFDPNGNPPCFRTEDEDMIVQTGDEVRLKIVGTRVDVKDIFAVG
Links
Other
S1
family RBPs
Other
Trichoplax adhaerens
RBPs
1 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
estExt_Genewise1Plus.C_sca_120103
Lottia gigantea
estExt_Genewise1Plus.C_sca_120103
N
0.714