CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins

RBP Information

Cmyd_10013139 *(Chelonia mydas)* RRM
Pfam ID	Interpro ID	Gene ID	CISBP-RNA ID	Sequence source
PF00076 (RRMs_3D)	IPR000504	Cmyd_10013139	T118463_2.00	GigaDB (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID	Species	Sequence Logo	IUPAC	Type/Study/Study ID	JPLE e-dist
Cmyd_10013139 M06828_2.00	Chelonia mydas		NKURGKKN	JPLE Sasse et al.(2025) RM_Che.myd_Cmyd_10013139	0.055
Motifs from related RBPs
Name/Motif ID	Species	Sequence Logo	IUPAC	Type/Study/Study ID	RBD Identity
NONO M00507_2.00	Homo sapiens	Sequence logo not available	GAGAGGAAC	SELEX Cook et al.(2011)	0.980
NONO M00505_2.00	Homo sapiens		AGGGA	SELEX Cook et al.(2011)	0.980
SFPQ M00809_2.00	Homo sapiens		UAGUG	RNA-Bind-n-Seq Dominguez et al.(2018)	0.736
SFPQ M00808_2.00	Homo sapiens		WGUAAN	RNA-Bind-n-Seq Dominguez et al.(2018)	0.736
SFPQ M00506_2.00	Homo sapiens	Sequence logo not available	UGGAGAGGAAC	SELEX Cook et al.(2011)	0.736
SFPQ M00190_2.00	Homo sapiens		KURRUKK	RNAcompete Ray et al.(2013)	0.736
For this family, RBPs with RBD identity > 0.7* will likely have a similar motif*
Motifs from training set RBPs that strongly contributed to the reconstructed motif
Name/Motif ID	Species	Sequence Logo	IUPAC	Type/Study/Study ID	e-dist (% contribution)
SFPQ M00190_2.00	Homo sapiens		KURRUKK	RNAcompete Ray et al.(2013) RNCMPT00177	0.055 (89.11%)

RNA Binding Domains

Protein ID	Domain	From	To	Sequence
Cmyd_10013139	RRM	57	134	TQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKDKGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRFACHSA
Cmyd_10013139	RRM	131	199	CHSASLTVRNLPQFVSNELLEEAFSVFGQVERAVVIVDDRGRSSGKGIVEFSGKPAARKALDRCSEGSF

RNA contacting residues

Links
Other RRM family RBPs
Other *Chelonia mydas* RBPs

124 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name	Species	Gene ID	Motif Evidence	RBD Identity	Action
ENSAMXG00000003616	Astyanax mexicanus	ENSAMXG00000003616	I	0.000
ENSONIG00000018378	Oreochromis niloticus	ENSONIG00000018378	I	0.000
ENSONIG00000018380	Oreochromis niloticus	ENSONIG00000018380	I	0.000
ENSPFOG00000006821	Poecilia formosa	ENSPFOG00000006821	I	0.000
ENSPFOG00000006836	Poecilia formosa	ENSPFOG00000006836	I	0.000
ENSXMAG00000011696	Xiphophorus maculatus	ENSXMAG00000011696	I	0.000
rbm4.3	Danio rerio	ENSDARG00000022129	D	0.000
rbm4.3	Gasterosteus aculeatus	ENSGACG00000019980	I	0.000
rbm4.3	Oryzias latipes	ENSORLG00000011589	I	0.000
rbm4.3	Oryzias latipes	ENSORLG00000012473	I	0.000
rbm4.3	Tetraodon nigroviridis	ENSTNIG00000005668	I	0.000
rbm4.3	Takifugu rubripes	ENSTRUG00000010623	I	0.000