Cmyd_10013139 (Chelonia mydas)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRMs_3D) IPR000504 Cmyd_10013139 T118463_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID JPLE
e-dist
Cmyd_10013139
M06828_2.00		 Chelonia mydas NKURGKKN JPLE
Sasse et al.(2025)
RM_Che.myd_Cmyd_10013139 		0.055

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
NONO
M00507_2.00 		Homo sapiens Sequence logo not available GAGAGGAAC SELEX
Cook et al.(2011)
0.980
NONO
M00505_2.00 		Homo sapiens AGGGA SELEX
Cook et al.(2011)
0.980
SFPQ
M00809_2.00 		Homo sapiens UAGUG RNA-Bind-n-Seq
Dominguez et al.(2018)
0.736
SFPQ
M00808_2.00 		Homo sapiens WGUAAN RNA-Bind-n-Seq
Dominguez et al.(2018)
0.736
SFPQ
M00506_2.00 		Homo sapiens Sequence logo not available UGGAGAGGAAC SELEX
Cook et al.(2011)
0.736
SFPQ
M00190_2.00 		Homo sapiens KURRUKK RNAcompete
Ray et al.(2013)
0.736
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

Motifs from training set RBPs that strongly contributed to the reconstructed motif

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID e-dist (%
contribution)
SFPQ
M00190_2.00 		Homo sapiens KURRUKK RNAcompete
Ray et al.(2013)
RNCMPT00177 		0.055
(89.11%)

RNA Binding Domains

Protein ID Domain From To Sequence
Cmyd_10013139 RRM 57 134
Cmyd_10013139 RRM 131 199

RNA contacting residues

Links

Other RRM family RBPs
Other Chelonia mydas RBPs

124 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
ENSPSIG00000010678 Pelodiscus sinensis ENSPSIG00000010678 I 1.000
Tal_R004102 Tyto alba Tal_R004102 I 0.993
ENSAPLG00000002642 Anas platyrhynchos ENSAPLG00000002642 I 0.993
ENSFALG00000011765 Ficedula albicollis ENSFALG00000011765 I 0.993
NONO Gallus gallus ENSGALG00000005507 I 0.993
NONO Meleagris gallopavo ENSMGAG00000008869 I 0.993
NONO Taeniopygia guttata ENSTGUG00000007048 I 0.993
Afo_R007329 Aptenodytes forsteri Afo_R007329 I 0.993
Alligator_sinensis_CCG000628.3 Alligator sinensis Alligator_sinensis_CCG000628.3 I 0.993
Brh_R000687 Buceros rhinoceros Brh_R000687 I 0.993
Ogr12033 Ophisaurus gracilis Ogr12033 I 0.986
Pvit_05344 Pogona vitticeps Pvit_05344 I 0.986
ENSMEUG00000004294 Macropus eugenii ENSMEUG00000004294 I 0.986
NONO Monodelphis domestica ENSMODG00000004445 I 0.986
ENSSHAG00000010195 Sarcophilus harrisii ENSSHAG00000010195 I 0.986
ENSBTAP00000016122-D1 Bos grunniens ENSBTAP00000016122-D1 I 0.980
ENSP00000276079 Macaca fascicularis ENSP00000276079 I 0.980
Myotis_brandtii_NONO_10007307 Myotis brandtii Myotis_brandtii_NONO_10007307 I 0.980
ENSAMEG00000016057 Ailuropoda melanoleuca ENSAMEG00000016057 I 0.980
NONO Bos taurus ENSBTAG00000012152 I 0.980
ENSCAFG00000003207 Canis familiaris ENSCAFG00000003207 I 0.980
ENSCAFG00000017071 Canis familiaris ENSCAFG00000017071 I 0.980
ENSCJAG00000036744 Callithrix jacchus ENSCJAG00000036744 I 0.980
ENSCPOG00000010263 Cavia porcellus ENSCPOG00000010263 I 0.980
ENSDNOG00000003267 Dasypus novemcinctus ENSDNOG00000003267 I 0.980
NONO Equus caballus ENSECAG00000008502 I 0.980
NONO Erinaceus europaeus ENSEEUG00000014404 I 0.980
NONO Felis catus ENSFCAG00000014807 I 0.980
NONO Homo sapiens ENSG00000147140 D 0.980
NONO Gorilla gorilla ENSGGOG00000006194 I 0.980
NONO Loxodonta africana ENSLAFG00000013422 I 0.980
NONO Microcebus murinus ENSMICG00000000232 I 0.980
NONO Myotis lucifugus ENSMLUG00000002489 I 0.980
NONO Macaca mulatta ENSMMUG00000020481 I 0.980
ENSMPUG00000004937 Mustela putorius furo ENSMPUG00000004937 I 0.980
Nono Mus musculus ENSMUSG00000031311 I 0.980
ENSNLEG00000001278 Nomascus leucogenys ENSNLEG00000001278 I 0.980
ENSOCUG00000021848 Oryctolagus cuniculus ENSOCUG00000021848 I 0.980
NONO Otolemur garnettii ENSOGAG00000004834 I 0.980
ENSPANG00000013979 Papio anubis ENSPANG00000013979 I 0.980
NONO Procavia capensis ENSPCAG00000002541 I 0.980
ENSPPYG00000020451 Pongo abelii ENSPPYG00000020451 I 0.980
NONO Pan troglodytes ENSPTRG00000022010 I 0.980
NONO Pteropus vampyrus ENSPVAG00000016503 I 0.980
Nono Rattus norvegicus ENSRNOG00000003689 I 0.980
NONO Sus scrofa ENSSSCG00000023245 I 0.980
ENSSTOG00000015869 Ictidomys tridecemlineatus ENSSTOG00000015869 I 0.980
NONO Tursiops truncatus ENSTTRG00000009605 I 0.980
NONO Vicugna pacos ENSVPAG00000002272 I 0.980
ENSOARG00000016966 Ovis aries ENSOARG00000016966 I 0.973
NONO Sorex araneus ENSSARG00000007959 I 0.973
NONO Anolis carolinensis ENSACAG00000015026 I 0.959
ENSCPOG00000023605 Cavia porcellus ENSCPOG00000023605 I 0.959
Gfo_R003471 Geospiza fortis Gfo_R003471 I 0.952
Aan_R015248 Calypte anna Aan_R015248 I 0.932
ENSCJAG00000003136 Callithrix jacchus ENSCJAG00000003136 I 0.932
nono Xenopus tropicalis XB-GENE-1002494 I 0.859
nono.L Xenopus laevis XB-GENE-1002501 I 0.851
ENSCAFG00000013766 Canis familiaris ENSCAFG00000013766 I 0.838
ENSLACG00000000598 Latimeria chalumnae ENSLACG00000000598 I 0.831
sfpq Xenopus tropicalis XB-GENE-5968416 I 0.764
ENSLACG00000014728 Latimeria chalumnae ENSLACG00000014728 I 0.753
ENSLOCG00000014739 Lepisosteus oculatus ENSLOCG00000014739 I 0.750
sfpq Takifugu rubripes ENSTRUG00000003783 I 0.750
ENSCPOG00000026604 Cavia porcellus ENSCPOG00000026604 I 0.745
Myotis_brandtii_SFPQ_10028873 Myotis brandtii Myotis_brandtii_SFPQ_10028873 I 0.743
ENSLOCG00000001067 Lepisosteus oculatus ENSLOCG00000001067 I 0.743
ENSMLUG00000027090 Myotis lucifugus ENSMLUG00000027090 I 0.743
Cmyd_10015354 Chelonia mydas Cmyd_10015354 I 0.736
ENSP00000349748-D1 Bos grunniens ENSP00000349748-D1 I 0.736
Pvit_19348 Pogona vitticeps Pvit_19348 I 0.736
ENSAMEG00000000815 Ailuropoda melanoleuca ENSAMEG00000000815 I 0.736
SFPQ Bos taurus ENSBTAG00000016328 I 0.736
ENSCAFG00000003595 Canis familiaris ENSCAFG00000003595 I 0.736
ENSCAFG00000030809 Canis familiaris ENSCAFG00000030809 I 0.736
ENSCJAG00000001431 Callithrix jacchus ENSCJAG00000001431 I 0.736
ENSCPOG00000015018 Cavia porcellus ENSCPOG00000015018 I 0.736
ENSCSAG00000001082 Chlorocebus sabaeus ENSCSAG00000001082 I 0.736
SFPQ Dasypus novemcinctus ENSDNOG00000049454 I 0.736
ENSECAG00000000642 Equus caballus ENSECAG00000000642 I 0.736
SFPQ Echinops telfairi ENSETEG00000001095 I 0.736
ENSFCAG00000031287 Felis catus ENSFCAG00000031287 I 0.736
SFPQ Homo sapiens ENSG00000116560 D 0.736
SFPQ Gorilla gorilla ENSGGOG00000026354 I 0.736
SFPQ Loxodonta africana ENSLAFG00000015951 I 0.736
ENSMICG00000011755 Microcebus murinus ENSMICG00000011755 I 0.736
Sfpq Mus musculus ENSMUSG00000028820 I 0.736
ENSNLEG00000010868 Nomascus leucogenys ENSNLEG00000010868 I 0.736
ENSOARG00000019439 Ovis aries ENSOARG00000019439 I 0.736
SFPQ Oryctolagus cuniculus ENSOCUG00000001877 I 0.736
SFPQ Otolemur garnettii ENSOGAG00000027710 I 0.736
SFPQ Ochotona princeps ENSOPRG00000013696 I 0.736
ENSPANG00000005380 Papio anubis ENSPANG00000005380 I 0.736
SFPQ Procavia capensis ENSPCAG00000006164 I 0.736
ENSPPYG00000001560 Pongo abelii ENSPPYG00000001560 I 0.736
ENSPSIG00000011494 Pelodiscus sinensis ENSPSIG00000011494 I 0.736
SFPQ Pan troglodytes ENSPTRG00000000518 I 0.736
Sfpq Rattus norvegicus ENSRNOG00000058461 I 0.736
ENSSTOG00000014004 Ictidomys tridecemlineatus ENSSTOG00000014004 I 0.736
SFPQ Tursiops truncatus ENSTTRG00000013930 I 0.736
SFPQ Vicugna pacos ENSVPAG00000006960 I 0.736
Gfo_R008467 Geospiza fortis Gfo_R008467 I 0.730
Tal_R009770 Tyto alba Tal_R009770 I 0.730
ENSAPLG00000003643 Anas platyrhynchos ENSAPLG00000003643 I 0.730
ENSMEUG00000014082 Macropus eugenii ENSMEUG00000014082 I 0.730
SFPQ Monodelphis domestica ENSMODG00000017937 I 0.730
ENSSHAG00000016107 Sarcophilus harrisii ENSSHAG00000016107 I 0.730
ENSTGUG00000001722 Taeniopygia guttata ENSTGUG00000001722 I 0.730
Aan_R015520 Calypte anna Aan_R015520 I 0.730
Afo_R013931 Aptenodytes forsteri Afo_R013931 I 0.730
Brh_R010044 Buceros rhinoceros Brh_R010044 I 0.730
ENSAMXG00000011538 Astyanax mexicanus ENSAMXG00000011538 I 0.723
SFPQ Gallus gallus ENSGALG00000002514 I 0.723
Alligator_sinensis_CCG014919.3 Alligator sinensis Alligator_sinensis_CCG014919.3 I 0.723
pspc1 Xenopus tropicalis XB-GENE-492866 I 0.716
ENSGMOG00000011950 Gadus morhua ENSGMOG00000011950 I 0.715
sfpq Tetraodon nigroviridis ENSTNIG00000011331 I 0.712
SFPQ Anolis carolinensis ENSACAG00000013307 I 0.709
ENSCAFG00000018271 Canis familiaris ENSCAFG00000018271 I 0.709
nono Danio rerio ENSDARG00000020482 I 0.709
Sfpq Dipodomys ordii ENSDORG00000008109 I 0.709
SFPQ Tupaia belangeri ENSTBEG00000006238 I 0.709
ENSAMXG00000006846 Astyanax mexicanus ENSAMXG00000006846 I 0.703
sfpq Gasterosteus aculeatus ENSGACG00000002034 I 0.700