CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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ENSAPLG00000006246
(
Anas platyrhynchos
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRMs_3D)
IPR000504
ENSAPLG00000006246
T077186_2.00
Ensembl (2018-Dec-8)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
JPLE
e-dist
ENSAPLG00000006246
M01558_2.00
Anas platyrhynchos
NGUDGKKK
JPLE
Sasse et al.(2025)
RM_Ana.pla_ENSAPLG00000006246
0.054
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
Motifs from training set RBPs that strongly contributed to the reconstructed motif
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
e-dist (%
contribution)
SFPQ
M00190_2.00
Homo sapiens
KURRUKK
RNAcompete
Ray et al.(2013)
RNCMPT00177
0.054
(93.66%)
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSAPLP00000005858
RRM
5
36
ESRTLAEIAKAELDGTILKSRPLRIRFATHGA
ENSAPLP00000005858
RRM
33
101
THGAALTVKNLSPVVSNELLEQAFSQFGPVERAVVVVDDRGRATGKGFVEFAAKPPARKALERCSDGAF
RNA contacting residues
Links
Other
RRM
family RBPs
Other
Anas platyrhynchos
RBPs
8 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
PSPC1
Equus caballus
ENSECAG00000017286
I
0.950
PSPC1
Echinops telfairi
ENSETEG00000000502
I
0.950
PSPC1
Microcebus murinus
ENSMICG00000013970
I
0.950
ENSOANG00000009017
Ornithorhynchus anatinus
ENSOANG00000009017
I
0.950
PSPC1
Vicugna pacos
ENSVPAG00000010029
I
0.950
PSPC1
Meleagris gallopavo
ENSMGAG00000015134
I
0.944
pspc1
Danio rerio
ENSDARG00000006621
I
0.800
ENSSARG00000006409
Sorex araneus
ENSSARG00000006409
I
0.772