pspc1 (Danio rerio)
RRM

RBP Information

Pfam ID Interpro ID Gene ID CISBP-RNA ID Sequence source
PF00076 (RRMs_3D) IPR000504 ENSDARG00000006621 T078798_2.00 Ensembl (2018-Dec-8)

Directly determined binding motifs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID JPLE
e-dist
pspc1
M08366_2.00		 Danio rerio NGURGKKK JPLE
Sasse et al.(2025)
RM_Dan.rer_ENSDARG00000006621 		0.055

Motifs from related RBPs

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID RBD
Identity
SFPQ
M00809_2.00 		Homo sapiens UAGUG RNA-Bind-n-Seq
Dominguez et al.(2018)
0.714
SFPQ
M00808_2.00 		Homo sapiens WGUAAN RNA-Bind-n-Seq
Dominguez et al.(2018)
0.714
SFPQ
M00506_2.00 		Homo sapiens Sequence logo not available UGGAGAGGAAC SELEX
Cook et al.(2011)
0.714
SFPQ
M00190_2.00 		Homo sapiens KURRUKK RNAcompete
Ray et al.(2013)
0.714
For this family, RBPs with RBD identity > 0.7 will likely have a similar motif

Motifs from training set RBPs that strongly contributed to the reconstructed motif

Name/Motif ID Species Sequence Logo IUPAC Type/Study/Study ID e-dist (%
contribution)
SFPQ
M00190_2.00 		Homo sapiens KURRUKK RNAcompete
Ray et al.(2013)
RNCMPT00177 		0.055
(89.38%)

RNA Binding Domains

Protein ID Domain From To Sequence
ENSDARP00000093111 RRM 73 150
ENSDARP00000093111 RRM 147 212
ENSDARP00000140393 RRM 73 150
ENSDARP00000140393 RRM 147 212
ENSDARP00000141514 RRM 1 36
ENSDARP00000141514 RRM 33 99

RNA contacting residues

Links

Other RRM family RBPs
Other Danio rerio RBPs

133 Related RBPs

Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name Species Gene ID Motif Evidence RBD
Identity		 Action
ENSLOCG00000010832 Lepisosteus oculatus ENSLOCG00000010832 I 0.889
ENSGMOG00000015074 Gadus morhua ENSGMOG00000015074 I 0.862
ENSAMXG00000015717 Astyanax mexicanus ENSAMXG00000015717 I 0.861
PSPC1 Dasypus novemcinctus ENSDNOG00000011078 I 0.819
PSPC1 Felis catus ENSFCAG00000027841 I 0.819
PSPC1 Homo sapiens ENSG00000121390 I 0.819
PSPC1 Gorilla gorilla ENSGGOG00000003414 I 0.819
PSPC1 Loxodonta africana ENSLAFG00000010968 I 0.819
ENSMEUG00000000476 Macropus eugenii ENSMEUG00000000476 I 0.819
PSPC1 Myotis lucifugus ENSMLUG00000017663 I 0.819
PSPC1 Macaca mulatta ENSMMUG00000020262 I 0.819
PSPC1 Monodelphis domestica ENSMODG00000008029 I 0.819
ENSMPUG00000013347 Mustela putorius furo ENSMPUG00000013347 I 0.819
Pspc1 Mus musculus ENSMUSG00000021938 I 0.819
ENSNLEG00000001294 Nomascus leucogenys ENSNLEG00000001294 I 0.819
PSPC1 Oryctolagus cuniculus ENSOCUG00000006153 I 0.819
PSPC1 Otolemur garnettii ENSOGAG00000012643 I 0.819
ENSPANG00000001992 Papio anubis ENSPANG00000001992 I 0.819
ENSPPYG00000005186 Pongo abelii ENSPPYG00000005186 I 0.819
ENSPSIG00000005168 Pelodiscus sinensis ENSPSIG00000005168 I 0.819
PSPC1 Pan troglodytes ENSPTRG00000005677 I 0.819
Pspc1 Rattus norvegicus ENSRNOG00000020782 I 0.819
PSPC1 Sorex araneus ENSSARG00000000888 I 0.819
ENSSHAG00000004696 Sarcophilus harrisii ENSSHAG00000004696 I 0.819
ENSSTOG00000026833 Ictidomys tridecemlineatus ENSSTOG00000026833 I 0.819
ENSAMEG00000017420 Ailuropoda melanoleuca ENSAMEG00000017420 I 0.819
PSPC1 Choloepus hoffmanni ENSCHOG00000008913 I 0.819
PSPC1 Callithrix jacchus ENSCJAG00000004554 I 0.819
PSPC1 Cavia porcellus ENSCPOG00000000395 I 0.819
ENSLACG00000010762 Latimeria chalumnae ENSLACG00000010762 I 0.816
Pspc1 Dipodomys ordii ENSDORG00000016050 I 0.812
PSPC1 Erinaceus europaeus ENSEEUG00000011288 I 0.812
ENSOARG00000014163 Ovis aries ENSOARG00000014163 I 0.812
PSPC1 Pteropus vampyrus ENSPVAG00000005036 I 0.812
PSPC1 Sus scrofa ENSSSCG00000009569 I 0.812
PSPC1 Tursiops truncatus ENSTTRG00000003343 I 0.812
ENSBTAP00000005134-D1 Bos grunniens ENSBTAP00000005134-D1 I 0.812
PSPC1 Bos taurus ENSBTAG00000003934 I 0.812
ENSFALG00000008750 Ficedula albicollis ENSFALG00000008750 I 0.810
PSPC1 Gallus gallus ENSGALG00000017142 I 0.810
PSPC1 Taeniopygia guttata ENSTGUG00000011295 I 0.810
Aan_R001274 Calypte anna Aan_R001274 I 0.810
Afo_R008576 Aptenodytes forsteri Afo_R008576 I 0.810
Brh_R000965 Buceros rhinoceros Brh_R000965 I 0.810
Ogr05221 Ophisaurus gracilis Ogr05221 I 0.810
Pvit_12920 Pogona vitticeps Pvit_12920 I 0.810
Tal_R009732 Tyto alba Tal_R009732 I 0.810
PSPC1 Anolis carolinensis ENSACAG00000002093 I 0.810
pspc1 Xenopus tropicalis XB-GENE-492866 I 0.803
ENSAPLG00000006246 Anas platyrhynchos ENSAPLG00000006246 I 0.800
PSPC1 Equus caballus ENSECAG00000017286 I 0.796
PSPC1 Echinops telfairi ENSETEG00000000502 I 0.796
PSPC1 Microcebus murinus ENSMICG00000013970 I 0.796
ENSOANG00000009017 Ornithorhynchus anatinus ENSOANG00000009017 I 0.796
PSPC1 Vicugna pacos ENSVPAG00000010029 I 0.796
Alligator_sinensis_CCG002824.1 Alligator sinensis Alligator_sinensis_CCG002824.1 I 0.792
ENSONIG00000012010 Oreochromis niloticus ENSONIG00000012010 I 0.792
PSPC1 Meleagris gallopavo ENSMGAG00000015134 I 0.785
pspc1 Takifugu rubripes ENSTRUG00000011335 I 0.785
ENSORLG00000004232 Oryzias latipes ENSORLG00000004232 I 0.781
nono Danio rerio ENSDARG00000020482 I 0.778
pspc1 Tetraodon nigroviridis ENSTNIG00000010358 I 0.757
SFPQ Gallus gallus ENSGALG00000002514 I 0.752
sfpq Xenopus tropicalis XB-GENE-5968416 I 0.748
ENSLOCG00000014739 Lepisosteus oculatus ENSLOCG00000014739 I 0.747
pspc1 Gasterosteus aculeatus ENSGACG00000014901 I 0.743
ENSTGUG00000001722 Taeniopygia guttata ENSTGUG00000001722 I 0.741
sfpq Takifugu rubripes ENSTRUG00000003783 I 0.741
Aan_R015520 Calypte anna Aan_R015520 I 0.741
Afo_R013931 Aptenodytes forsteri Afo_R013931 I 0.741
Brh_R010044 Buceros rhinoceros Brh_R010044 I 0.741
Gfo_R008467 Geospiza fortis Gfo_R008467 I 0.741
Tal_R009770 Tyto alba Tal_R009770 I 0.741
ENSAPLG00000003643 Anas platyrhynchos ENSAPLG00000003643 I 0.741
ENSLOCG00000001067 Lepisosteus oculatus ENSLOCG00000001067 I 0.735
ENSMEUG00000014082 Macropus eugenii ENSMEUG00000014082 I 0.735
SFPQ Monodelphis domestica ENSMODG00000017937 I 0.735
ENSSHAG00000016107 Sarcophilus harrisii ENSSHAG00000016107 I 0.735
Alligator_sinensis_CCG014919.3 Alligator sinensis Alligator_sinensis_CCG014919.3 I 0.735
ENSAMXG00000006846 Astyanax mexicanus ENSAMXG00000006846 I 0.735
Cmyd_10015354 Chelonia mydas Cmyd_10015354 I 0.728
ENSAMXG00000011538 Astyanax mexicanus ENSAMXG00000011538 I 0.728
sfpq Gasterosteus aculeatus ENSGACG00000002034 I 0.725
ENSPFOG00000003362 Poecilia formosa ENSPFOG00000003362 I 0.723
ENSXMAG00000007929 Xiphophorus maculatus ENSXMAG00000007929 I 0.723
ENSMLUG00000027090 Myotis lucifugus ENSMLUG00000027090 I 0.721
ENSPMAG00000005583 Petromyzon marinus ENSPMAG00000005583 I 0.721
ENSPSIG00000011494 Pelodiscus sinensis ENSPSIG00000011494 I 0.721
ENSXMAG00000019883 Xiphophorus maculatus ENSXMAG00000019883 I 0.721
Myotis_brandtii_SFPQ_10028873 Myotis brandtii Myotis_brandtii_SFPQ_10028873 I 0.721
SFPQ Anolis carolinensis ENSACAG00000013307 I 0.717
nono Takifugu rubripes ENSTRUG00000005554 I 0.716
SFPQ Dasypus novemcinctus ENSDNOG00000049454 I 0.714
ENSECAG00000000642 Equus caballus ENSECAG00000000642 I 0.714
SFPQ Echinops telfairi ENSETEG00000001095 I 0.714
ENSFCAG00000031287 Felis catus ENSFCAG00000031287 I 0.714
SFPQ Homo sapiens ENSG00000116560 D 0.714
SFPQ Gorilla gorilla ENSGGOG00000026354 I 0.714
SFPQ Loxodonta africana ENSLAFG00000015951 I 0.714
ENSMICG00000011755 Microcebus murinus ENSMICG00000011755 I 0.714
Sfpq Mus musculus ENSMUSG00000028820 I 0.714
ENSNLEG00000010868 Nomascus leucogenys ENSNLEG00000010868 I 0.714
ENSOARG00000019439 Ovis aries ENSOARG00000019439 I 0.714
SFPQ Oryctolagus cuniculus ENSOCUG00000001877 I 0.714
SFPQ Otolemur garnettii ENSOGAG00000027710 I 0.714
SFPQ Ochotona princeps ENSOPRG00000013696 I 0.714
ENSPANG00000005380 Papio anubis ENSPANG00000005380 I 0.714
SFPQ Procavia capensis ENSPCAG00000006164 I 0.714
ENSPPYG00000001560 Pongo abelii ENSPPYG00000001560 I 0.714
SFPQ Pan troglodytes ENSPTRG00000000518 I 0.714
Sfpq Rattus norvegicus ENSRNOG00000058461 I 0.714
ENSSARG00000006409 Sorex araneus ENSSARG00000006409 I 0.714
ENSSTOG00000014004 Ictidomys tridecemlineatus ENSSTOG00000014004 I 0.714
SFPQ Tursiops truncatus ENSTTRG00000013930 I 0.714
SFPQ Vicugna pacos ENSVPAG00000006960 I 0.714
ENSP00000349748-D1 Bos grunniens ENSP00000349748-D1 I 0.714
Pvit_19348 Pogona vitticeps Pvit_19348 I 0.714
ENSAMEG00000000815 Ailuropoda melanoleuca ENSAMEG00000000815 I 0.714
SFPQ Bos taurus ENSBTAG00000016328 I 0.714
ENSCAFG00000003595 Canis familiaris ENSCAFG00000003595 I 0.714
ENSCJAG00000001431 Callithrix jacchus ENSCJAG00000001431 I 0.714
ENSCPOG00000015018 Cavia porcellus ENSCPOG00000015018 I 0.714
ENSCSAG00000001082 Chlorocebus sabaeus ENSCSAG00000001082 I 0.714
ENSGMOG00000011950 Gadus morhua ENSGMOG00000011950 I 0.713
ENSLACG00000014728 Latimeria chalumnae ENSLACG00000014728 I 0.711
sfpq Tetraodon nigroviridis ENSTNIG00000011331 I 0.711
nono Gasterosteus aculeatus ENSGACG00000011824 I 0.709
ENSPFOG00000016436 Poecilia formosa ENSPFOG00000016436 I 0.709
ENSCAFG00000018271 Canis familiaris ENSCAFG00000018271 I 0.705
ENSONIG00000020497 Oreochromis niloticus ENSONIG00000020497 I 0.704
sfpq Oryzias latipes ENSORLG00000007459 I 0.702
Sfpq Dipodomys ordii ENSDORG00000008109 I 0.701