CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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ENSCHOG00000002343
(
Choloepus hoffmanni
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRMs_3D)
IPR000504
ENSCHOG00000002343
T077759_2.00
Ensembl (2018-Dec-8)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
JPLE
e-dist
ENSCHOG00000002343
M07070_2.00
Choloepus hoffmanni
NGUDGKKK
JPLE
Sasse et al.(2025)
RM_Cho.hof_ENSCHOG00000002343
0.057
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
Motifs from training set RBPs that strongly contributed to the reconstructed motif
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
e-dist (%
contribution)
SFPQ
M00190_2.00
Homo sapiens
KURRUKK
RNAcompete
Ray et al.(2013)
RNCMPT00177
0.057
(92.33%)
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSCHOP00000002068
RRM
117
148
ETRTLAEIAKVELDNMPLRGKQLRVRFACHSA
ENSCHOP00000002068
RRM
145
213
CHSASLTVRNLPQYVSNELLEEAFSVFGQVERAVVIVDDRGRPSGKGIVEFSGKPAARKALDRCSEGSF
RNA contacting residues
Links
Other
RRM
family RBPs
Other
Choloepus hoffmanni
RBPs
4 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
NONO
Echinops telfairi
ENSETEG00000013823
I
1.000
ENSSHAG00000010195
Sarcophilus harrisii
ENSSHAG00000010195
I
0.935
ENSCJAG00000036744
Callithrix jacchus
ENSCJAG00000036744
I
0.789
ENSSARG00000006409
Sorex araneus
ENSSARG00000006409
I
0.752