CISBP-RNA Database: Catalog of Inferred Sequence Binding Preferences of RNA binding proteins
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RBM28
(
Procavia capensis
)
RRM
RBP Information
Pfam ID
Interpro ID
Gene ID
CISBP-RNA ID
Sequence source
PF00076 (RRMs_3D)
IPR000504
ENSPCAG00000008223
T085650_2.00
Ensembl (2018-Dec-8)
Directly determined binding motifs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
JPLE
e-dist
RBM28
M22916_2.00
Procavia capensis
NGWGUAGW
JPLE
Sasse et al.(2025)
RM_Pro.cap_ENSPCAG00000008223
0.014
Motifs from related RBPs
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
RBD
Identity
No RBPs with similar RNA binding domains
Motifs from training set RBPs that strongly contributed to the reconstructed motif
Name/Motif ID
Species
Sequence Logo
IUPAC
Type/Study/Study ID
e-dist (%
contribution)
RBM28
M00069_2.00
Homo sapiens
GWGUAGD
RNAcompete
Ray et al.(2013)
RNCMPT00049
0.014
(88.69%)
RNA Binding Domains
Protein ID
Domain
From
To
Sequence
ENSPCAP00000007722
RRM
3
82
GLTLFVSRLPPSARSEQLEELFSQVGPVKQCFVVTEKGSKACRGFGYVTFSMPEDVQRALKEITTFEGCKISLTVAKRKL
ENSPCAP00000007722
RRM
111
153
DKKARLIIRNLSFKCSEDDLKTVFAQFGAVEVNVPRKPXXXXX
ENSPCAP00000007722
RRM
372
421
XXXXXXCAFAQFLTQEAAQKCLAVASPETEGGGLKLDGRQLRVDLAVTRD
ENSPCAP00000007722
RRM
484
575
VSQTRLCLHNLPKAVDDQQLRKLLLSATRGQKGVRIKECRVMRDLKTAHGRVRGQSLGYAFAEFQAHEHALMALRHINNNPDIFGPQKRPIV
RNA contacting residues
Links
Other
RRM
family RBPs
Other
Procavia capensis
RBPs
2 Related RBPs
Due to potential differences in protein isoforms or tested constructs, some RBPs without inferred motifs might appear in this list.
Name
Species
Gene ID
Motif Evidence
RBD
Identity
Action
RBM28
Tupaia belangeri
ENSTBEG00000012749
I
0.863
RBM28
Erinaceus europaeus
ENSEEUG00000002389
I
0.749